Python Module Index

a | d | e | k | m | p | s | t | u
 
a
prody.apps
    prody.apps.evol_apps.evol_coevol
    prody.apps.evol_apps.evol_conserv
    prody.apps.evol_apps.evol_fetch
    prody.apps.evol_apps.evol_filter
    prody.apps.evol_apps.evol_merge
    prody.apps.evol_apps.evol_occupancy
    prody.apps.evol_apps.evol_rankorder
    prody.apps.evol_apps.evol_refine
    prody.apps.evol_apps.evol_search
    prody.apps.prody_apps.prody_align
    prody.apps.prody_apps.prody_anm
    prody.apps.prody_apps.prody_biomol
    prody.apps.prody_apps.prody_blast
    prody.apps.prody_apps.prody_catdcd
    prody.apps.prody_apps.prody_contacts
    prody.apps.prody_apps.prody_fetch
    prody.apps.prody_apps.prody_gnm
    prody.apps.prody_apps.prody_pca
    prody.apps.prody_apps.prody_select
prody.atomic
    prody.atomic.atom
    prody.atomic.atomgroup
    prody.atomic.atomic
    prody.atomic.atommap
    prody.atomic.bond
    prody.atomic.chain
    prody.atomic.fields
    prody.atomic.flags
    prody.atomic.functions
    prody.atomic.hierview
    prody.atomic.pointer
    prody.atomic.residue
    prody.atomic.segment
    prody.atomic.select
    prody.atomic.selection
    prody.atomic.subset
 
d
prody.database
    prody.database.pfam
prody.dynamics
    prody.dynamics.analysis
    prody.dynamics.anm
    prody.dynamics.compare
    prody.dynamics.editing
    prody.dynamics.functions
    prody.dynamics.gamma
    prody.dynamics.gnm
    prody.dynamics.heatmapper
    prody.dynamics.mode
    prody.dynamics.modeset
    prody.dynamics.nma
    prody.dynamics.nmdfile
    prody.dynamics.pca
    prody.dynamics.plotting
    prody.dynamics.rtb
    prody.dynamics.sampling
 
e
prody.ensemble
    prody.ensemble.conformation
    prody.ensemble.ensemble
    prody.ensemble.functions
    prody.ensemble.pdbensemble
 
k
prody.kdtree
    prody.kdtree.kdtree
 
m
prody.measure
    prody.measure.contacts
    prody.measure.measure
    prody.measure.transform
 
p
prody
prody.proteins
    prody.proteins.blastpdb
    prody.proteins.compare
    prody.proteins.dssp
    prody.proteins.functions
    prody.proteins.header
    prody.proteins.localpdb
    prody.proteins.pdbclusters
    prody.proteins.pdbfile
    prody.proteins.pdbligands
    prody.proteins.stride
    prody.proteins.wwpdb
 
s
prody.sequence
    prody.sequence.analysis
    prody.sequence.msa
    prody.sequence.msafile
    prody.sequence.plotting
    prody.sequence.sequence
 
t
prody.trajectory
    prody.trajectory.dcdfile
    prody.trajectory.frame
    prody.trajectory.psffile
    prody.trajectory.trajbase
    prody.trajectory.trajectory
    prody.trajectory.trajfile
 
u
prody.utilities
    prody.utilities.checkers
    prody.utilities.doctools
    prody.utilities.logger
    prody.utilities.misctools
    prody.utilities.pathtools
    prody.utilities.settings