prody biomol

Usage

Running prody biomol -h displays:

usage: prody biomol [-h] [--quiet] [--examples] [-p STR] [-b INT] pdb

positional arguments:
  pdb                   PDB identifier or filename

optional arguments:
  -h, --help            show this help message and exit
  --quiet               suppress info messages to stderr
  --examples            show usage examples and exit
  -p STR, --prefix STR  prefix for output files (default: pdb_biomol_)
  -b INT, --biomol INT  index of the biomolecule, by default all are generated

Examples

Running prody biomol --examples displays:

Generate biomolecule coordinates:

  $ prody biomol 2bfu