ProDy 1.8 Series

1.8.2 (Jun 5, 2016)

  • addCoordset() in PDBEnsemble class, has an additional argument for NMR models.

1.8.1 (May 28, 2016)


  • getHits() in PDBBlastRecord class, default overlap threshold changed to 0.7 to match with mapOntoChain().
  • calcModes() in RTB have a bug on number of modes and fixed.
  • Tab and indentation errors with Python 3.4 are fixed.

1.8 (May 13, 2016)


  • Identification of the weakest/strongest elements of the structure architecture provided together with 3D vizualization and statistics analysis.
  • Determination of the effective spring constant for selected pair of residues - useful for Single Molecule Force Spectroscopy (SMFS, AFM) and Steered Molecular Dynamics simulations.
  • Evaluating the contributions of each mode to selected deformations

New Features:

Python 2 and 3 Support

  • ProDy has been refactored to support Python 2.7 and 3.4. Windows installers for Python 2.7 and 3.4 are available in Installation.
  • Unit tests are compatible with Python 2.7 and 3.4, and running them with other versions gives errors due to unavailability of some unittest features.


  • Various indexing issues are fixed.
  • Compatibility issue of searchPfam() with Python 2.7.11 is fixed.