MSA Occupancy Calculation
MSA residue coevolution calculation application.
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evol_occupancy(msa, **kwargs)[source]
Calculate occupancy of rows and columns in MSA.
| Parameters: | msa – MSA file |
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Calculation Options
| Parameters: | occaxis (str) – calculate row or column occupancy or both., one of
'row', 'col', 'both', default is 'row' |
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Output Options
| Parameters: |
- prefix (str) – output filename prefix, default is msa filename with
_occupancy suffix
- label (str) – index for column based on msa label
- numformat (str) – number output format, default is
'%12g'
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