Pfam Search

Pfam search application.

evol_search(query, **kwargs)

Search Pfam with given query.

Parameters:query – protein UniProt ID or sequence, a PDB identifier, or a sequence file, where sequence have no gaps and 12 or more characters

Sequence Search Options

Parameters:

• search_b (bool) – search Pfam-B families
• skip_a (bool) – do not search Pfam-A families
• ga (bool) – use gathering threshold
• evalue (float) – e-value cutoff, must be less than 10.0
• timeout (int) – timeout in seconds for blocking connection attempt, default is 60

Output Options

Parameters:

• outname (str) – name for output file, default is standard output
• delimiter (str) – delimiter for output data columns, default is '\t'