This tutorial shows how to use the ANM to analyze the motions of proteins in the presence of membranes.
To follow this tutorial, you will need the following files:
7.5K May 10 09:33 2nwl_blocks.txt 1008K May 10 09:33 2NWL-opm.pdb 7.6K May 10 09:33 3kbc_blocks.txt 1.1M May 10 09:33 3KBC-opm.pdb
We recommend that you will follow this tutorial by typing commands in an IPython session, e.g.:
or with pylab environment:
$ ipython --pylab
First, we will make necessary imports from ProDy and Matplotlib packages.
In : from prody import * In : from pylab import * In : ion()
We have included these imports in every part of the tutorial, so that code copied from the online pages is complete. You do not need to repeat imports in the same Python session.