Normal Mode Wizard¶
Normal Mode Wizard (NMWiz) is a VMD plugin for depiction, animation, and comparative analysis of normal modes. Normal modes may come from principal component of structural ensembles, essential dynamics analysis of simulation trajectories, or normal mode analysis of protein structures. In addition, NMWiz can be used to depict any vector that describes a molecular motion.
To follow this tutorial, you will need the following files:
12M May 10 09:33 1dlo_anm_cross-correlations.txt 224K May 10 09:33 1dlo_anm.nmd 661K May 10 09:33 1dlo.pdb 3.3M May 10 09:33 p38_100frames.dcd 219K May 10 09:33 p38.pdb