Release Notes

v2.0 series come with new and improved sequence, structure, and dynamics analysis features. See release notes for details.

How to Cite

Bakan A, Meireles LM, Bahar I ProDy: Protein Dynamics Inferred from Theory and Experiments
Bioinformatics 2011 27(11):1575-1577.

Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics
Bioinformatics 2014 30(18):2681-2683.

ClustENMD¶

You can also read this tutorial in PDF format.

Tutorial files: ZIP TGZ

Introduction
Simulation and Analysis

Acknowledgments

Continued development of Protein Dynamics Software ProDy and associated programs is partially supported by the NIH-funded Biomedical Technology and Research Center (BTRC) on High Performance Computing for Multiscale Modeling of Biological Systems (MMBios) (P41 GM103712).